Try this ,
SPList customerList = Oweb.Lists["MarksMaster"];
query.Query = @"<Query><Where><Neq><FieldRef Name='ID' /><Value Type='Counter'>null</Value></Neq></Where></Query>";
query.Joins = @"<Join Type='Left' ListAlias='StudentMaster'>
<Eq>
<FieldRef Name='StudentID' RefType='ID'/>
<FieldRef List='MarksMaster' Name='ID'/>
</Eq>
</Join>";
query.ProjectedFields = @"<field Name='StudentName' Type='Lookup' List='MarksMaster' ShowField='Title'/>
<field Name='StudentSection' Type='Lookup' List='MarksMaster' ShowField='Section'/> ";
query.ViewFields = @"<FieldRef Name='StudentSection'/>
<FieldRef Name='ScienceGroup'/>";
Change the projectedFields as below,
query.ProjectedFields = @"<field Name='StudentName' Type='Lookup' List='StudentMaster' ShowField='Title'/>
<field Name='StudentSection' Type='Lookup' List='StudentMaster' ShowField='Section'/> ";
And Try this link also,
How to join two sharepoint list in c# by CAML query?