Just created a site collection based on the out of the box community site template. Farm version is SP1 Mark 2 (15.0.4571.1502). Added a few members, had a few posts and replies.
Reputation and community counters simply don't get updated. I've tried re-activating the web scoped community feature. That updated some of the counters.
Maybe worth mentioning is that I created a subsite in the same site collection based on the same community site template. Here all reputation counters are refreshed as expected.
Do you have similar experiences? Any catches? Fixes?