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There is no "Publish" you just save the document and it will default to the source Library. If they edit it in the browser it will save back to the Library as well. The user has to have sufficient permissions to perform the task, in this case they need Edit rights.
You need to install Microsoft Office 2010: Primary Interop Assemblies on the machine you're deploying; here is a link to Office 2010 in-case you're using Office 2010-> http://www.microsoft.com/en-us/download/details.aspx?id=3508
When you open the document that you have pulled off the SharePoint server (as that normally by default causes the DIP to open) and save the document or template to your machine, you just need to run the inspection function within word (I image the same exists for excel etc). In word 2007 this is on the path Office Icon > Prepare > Inspect Document. Select ...
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