I have an ongoing struggle (with myself :)) about the design and implementation of parts of the SharePoint system which I'm designing. I have included a diagram below. Effectively there are multiple sites that differ only by the content.
The structure of the sites and libraries (top 2 levels are sites):

Below is the page:

As you can see the page is one that shows an individual customer's document libraries. Logically, this places the page at the level of the individual customer's site.
However, given that the page is identical and points to identical libraries (in name, column layout, etc.) I am currently storing the page at the level of the top box in the diagram. This means that when I need to make changes to the layout I do not have to do it in multiple (1500!!) places.
However it is currently also bringing the challenge that I currently have, in that I am trying to programmatically change at run time 4 web parts on a page to show views of libraries that do not exist at the top level.
As I knock one error down another pops up. My question is more a design one really. Before I spend too much time trying to squash the errors am I going about this in the best way? How would you do it? All the sites currently are built programmatically and are "Blank Site"s containing "Document Library"s. There is no data in them at the moment so it wouldn't be a killer if I had to re-do them.
Thanks in advance for your input
Zak